Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905726.1_cds_XP_016455984.1_49863
CDS Infomation

[gene=LOC107779991] [db_xref=GeneID:107779991] [protein=pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like] [protein_id=XP_016455984.1] [location=10731..13661] [gbkey=CDS]
Sequence

ATGCCCTCTCTTCCTAATTCAAAGAAAAATCAAAATCGGTCTACCTTTTCTGATCACAAA
GTTGGCAGAGACGAAATTAGGATGGCGTGTGATTTGAAGACGTGGGTTGGAGAGAAATTG
AGGTCCCTAGGGTACAATTCAACGACGATAGAACTGGATATCGCTCATATTATTAGTGCA
TCTAAGAGATGTTCATCACCAGAGGATCTCGCAAATCAGTTTGTTGATACAGGAATGTTT
TCATCCTGTGATGAAACTCGCGTAAGCCAGTTTGCTCAAGAAATTTTTGCCAGGGTTGAT
CGCAAAAATAGGACAAATGTGTATGTTCAACGAGAAAGAGAGGCCGCATTGTTGGCCAAG
AAGCAGAAGACCTACACGCTTTTGGAGGCCGATGAAGACGACAACAATGTTCAAAGACGG
GCGGTTAAGAGACGTACTGAAGAAGAAAAGGCTATGATTGAAAATTTGAGGAAAAAATCT
AGACAAGAGTATTTGAAGAAACGGGAGCAGAAGAAGGTAGAGGAAATCAAATGTGATATC
GAAGAAGAGGGACACTTATTTGAGGTGGACAAATTGACTGAATCAGAACAACGGGAATTA
AGGTACAAGAAGGAAATTGTTGACCTAGTTACTAAAAAGCAGTGGTCAGAAGAAGAGGCG
GATGTGTATAGGATTCCTGAAGAGTATGATAATTTTGAAGGTGGTAGTGTTAATCAGAAA
AAGAGATTTTCTGTGACTACGCAACGTTACAAGGACGAACGGGAGATTCATCCACAACAA
GCATGGGAGCAAAATCAGCTTGACAATGCAACACTTCATTTTGGATCAAAAGACAGAAAG
ACAACAGATTATCAATTTGTGTTTGAAAACCAAATTGATTTCTTAAAGGCAGCTGTGATG
GATAGTGATGGTGTTAGTGTTAATGTTGATAAGCAGCAGCCTACCAGTGAGTCGTCAGTA
AAAAAATCTAAACTTAACGAGGATAGGAAGGACCTACCAATTTATCCCTATAAGGATGCT
TTGCTCCAAGCTGTTCAGGATCATCAGGTTCTTATTATAGTTGGAGAAACAGGTTCTGGG
AAGACAACTCAAATACCTCAATATCTGCACGAGGCGGGTTATACTAAGAACGGTGGGAAG
ATTGGTTGTACTCAACCTCGTCGAGTTGCTGCAATGAGGGTTGCTGCACGAGTTTCTCAT
GAGATGAGAGTTAAACTCGGGCACCAAGTTGGTTATTCCATCCGTTTTGAAGACTGTACT
TCTGAAAAAACTGTTCTGAAGTACATGACTGATGGAATGCTGCTAAGGGAGTTTCTTAGA
GAGCCTGATTTGGCGAGCTATAGTGTCATCATGGTGGACGAGGCTCACGAAAGAACTTTG
TCAACTGATGTTCTATTTGGCTTGGTTAAGGATGTTGCTCGTGCTCGCCCTGATCTCAAA
TTGCTTATTTCTAGTGCCACTCTGGATGCAGAAAAGTTCAGCGATTATTTTGATTGCGCT
CCGATTTTTAAAATACCTGGAAGGCGGTTTCCTATTGACATACATCATACAAAAGCACCA
ATAGCAGATTACGTGGATGCAGCAGTAGTTACTGCCCTTCAAATCCATGCAACTCAACCA
CAGGGTGATGGTGATATATTAATTTTTTTGACGGGGCAGGAGGAGATTGAAACAGCCGAG
AGTATCATTAAGCACCGGATAAAGGGTTTGGGAACAAAAATAGCAGAGCTGATAACTTGC
CCAATATATGCAAACTTACCAACTGAACTACAAGCCAAGATATTTGAGCCCACTCCTGAA
GGGGCTCGTAAGGTTGTCCTGGCTACAAATATAGCCGAGACATCTTTGACAATTGATGGG
ATTAAGTATGTTATTGATACAGGGTTTTGTAAGATCATGTGTTACAACCCTCGGACAGGA
ACCGAGTCATTGCTGGTCGCTCCCATCTCGAAGGCGTCTGCCAATCAACGTGCTGGTCGC
TCAGGACGAACAGGTCCTGGGAAGTGCTTCCGGTTATACACTGCACATAGCTACATGAAC
GATTTGGAAGATAACACAATTCCAGAAATACAAAGGACCAACCTTGCAAATGTCGTGCTC
TTACTCAAGAGCCTTGGGATTAAAGACTTGCTGAACTTTGACTTCATGGATCGTCCACCA
ACTGAAGCTCTACTTAAAGCCCTGGAGCTGTTGTTTGCGCTTGGTGCCCTTGATGAGGAT
GGTAAGTTAACCAAAGTGGGTGAAAAAATGGCTGAGTTTCCTCTGGATCCCATGCTATCC
AAGATGATTGTTGCCTCTGACAAGTACAAGTGCTCTGCTGAGATAATAAGTATTGCTGCA
ATGCTTTCTGTGGGGAATTCAGTCTTCTATCGTCCAAAGGACAGACAAGACCAAGCTGAC
AACGCATGGATGAACTTTCACATAGGCAATGTGGGAGATCATATTGCTCTGCTTAAGGTT
TACAATTCCTGGAAAGATACAAACTTTTCAACTCAATGGTGCTACGAGAATTATATCCAG
GTCAGAAGCATGAAAATAGCTAGAGATATCCGAGATCAGTTAGAAGGCCTGCTGGAAAGG
CTTGGAATTGAGTTGAATTCAAGTGTTAATGACTTGGAAGCAGTTAAGAAATCTATAATA
TCAGGATTCTTTCCCCACGCAGCAAGACTACAGAAGAATGGATCCTATCGAACTGTTAAG
CATCCCCAGACAGGTCATATTCACCCCAGCTCAGGTTTATCACAGGTGCTTCCTAGATGG
GTTGTCTACCATGAGCTGGTCCTGACAACTAAGGAGTACATGCGGCAGGTTACTGAATTG
AAACCAGAATGGCTAGTAGAGGTAGCTCCCCACTACTATCAGTTGAAAGACGTTGAAGAT
TCTAGCTCAAAGAAAATGCCTCGTGGAATTGGCCTTGCATCTTTTAAATAG

Peptide Sequence

PEP ID

XP_016455984.1
PEP Infomation

PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like [Nicotiana tabacum]
Sequence

MPSLPNSKKNQNRSTFSDHKVGRDEIRMACDLKTWVGEKLRSLGYNSTTIELDIAHIISA
SKRCSSPEDLANQFVDTGMFSSCDETRVSQFAQEIFARVDRKNRTNVYVQREREAALLAK
KQKTYTLLEADEDDNNVQRRAVKRRTEEEKAMIENLRKKSRQEYLKKREQKKVEEIKCDI
EEEGHLFEVDKLTESEQRELRYKKEIVDLVTKKQWSEEEADVYRIPEEYDNFEGGSVNQK
KRFSVTTQRYKDEREIHPQQAWEQNQLDNATLHFGSKDRKTTDYQFVFENQIDFLKAAVM
DSDGVSVNVDKQQPTSESSVKKSKLNEDRKDLPIYPYKDALLQAVQDHQVLIIVGETGSG
KTTQIPQYLHEAGYTKNGGKIGCTQPRRVAAMRVAARVSHEMRVKLGHQVGYSIRFEDCT
SEKTVLKYMTDGMLLREFLREPDLASYSVIMVDEAHERTLSTDVLFGLVKDVARARPDLK
LLISSATLDAEKFSDYFDCAPIFKIPGRRFPIDIHHTKAPIADYVDAAVVTALQIHATQP
QGDGDILIFLTGQEEIETAESIIKHRIKGLGTKIAELITCPIYANLPTELQAKIFEPTPE
GARKVVLATNIAETSLTIDGIKYVIDTGFCKIMCYNPRTGTESLLVAPISKASANQRAGR
SGRTGPGKCFRLYTAHSYMNDLEDNTIPEIQRTNLANVVLLLKSLGIKDLLNFDFMDRPP
TEALLKALELLFALGALDEDGKLTKVGEKMAEFPLDPMLSKMIVASDKYKCSAEIISIAA
MLSVGNSVFYRPKDRQDQADNAWMNFHIGNVGDHIALLKVYNSWKDTNFSTQWCYENYIQ
VRSMKIARDIRDQLEGLLERLGIELNSSVNDLEAVKKSIISGFFPHAARLQKNGSYRTVK
HPQTGHIHPSSGLSQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEVAPHYYQLKDVED
SSSKKMPRGIGLASFK

Transcript Sequence

Gene sequence data has not been registered.